phil
i have seen this numerous times when stone stacked in crates like this.
it is particularly common with jura and bateig.
it is to do with that part stone being exposed to sunlight i believe.
I have tried many cleaners on stone even before fixing with not much luck.
jura changes colour over time after stone has been fixed through oxidation but it usually goes darker not lighter.
i have recently seen a jura grey floor i did 18 months ago and it had changed from grey to brown.
this was not because it was dirty just oxidating.
your problem seems to be the reverse with the exposed pieces being lighter.
could this be because you have sealed the floor before the stone had time to dry out properly .
the exposed bits had maybe alot of time exposed to sun and bone dry and rest of
tile was damp from cutting and packing .
jura can take quite a number of days to dry.
if this is the case the darker part of stone should dry even through the stainstop .
but what you might find is that what you thought was the lighter part of stone on exposed edges becomes the darker because this part has been affected by being exposed to light.
you wont know this until the stone has thorughly dried.
it can be very confusing especially if the stone had been stacked outside for a while uncovered .those exposed parts have dried but then it could rain again before delivery and when you receive it all looks the same ie wet.
when floor starts drying out after laying you start to see what you have now ie lighter edges