I'm guessinfg its one of two things.
a. The floor is not secured enough to the rafters below, so is flexing.
b. and I'm with Whitebeam on this, no un/decoupling membrane has been used.For tiling over a wooden floor there is no substitute for a decoupling membrane, Trouble is not many tradesmen, tilers included have heard of these so they get sold backer boards. What you have is 'defraction within the substrate', This means whatever you are tiling to is moving, If you were to dig straight down through the tile along the crack you will find this crack will 9 times out of ten be above a joint in the backer board. Wood moves, and backer boards stress at their joints,and unless its glued with flexible adhesive and screwed at least every 100mm centres it will crack. A de or uncoupling membrane if fixed above the wood will takes the stress within itself thus relieving the stresses in the wood. It is also recommended now that any underfloor heated floor has a uncoupling membrane included, though this happens rarely due to cost.
Google Schluter Ditra Matting and you'll see info on these kinds of mats. We NEVER tile to a wooden floor without them, and we've fixed hundreds of meters with no problems.
Solution, well it may stabilise, or it may continue to crack. I'd inform the builder of your problem, then decide if you want to leave it a while for the floor to stop moving (could be damp flooring or timbers), or there really is no other way than to dig the floor up, if its flexing its needs fixing, and its too late to add a membrane because of the height difference between the old and replaced tiles.
Ooh and if you fobbed off with 'its the tiles' it's not because the cracks are in an adjacent straight line, so this proves things aren't too happy under the tiles.